| Achievement | How to unlock | Points
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| - Defeat the new threat from the shadows.
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| - Purify the Dark Dragon and save the world.
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| - Complete all Purgatory trials.
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| - Hold your own against Ryu Hayabusa.
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| - Achieve a 2000-point combo.
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| - Defeat Oniwaka in his final encounter-he wouldn't have lasted long in this world anyway.
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| - Clear Chapter 06 without hitting any obstacles (Auto Movement must be turned OFF)
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- It's a Dog! It's a Plane! It's...
| - Defeat Kurobo and break the second seal.
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| - Clear Chapter 12 without being hit by a laser (Auto Movement must be turned OFF)
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| - Learn all Kage-Hiruko Weapon Skills.
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| - Learn all Magatsuhi Weapon Skills.
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| - Learn all Takeminakata Weapon Skills.
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| - Learn all Yatousen Weapon Skills.
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| - Use Takeminakata to attack five or more enemies at once.
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- Master of the Dark Dragon Blade
| - Learn all Dark Dragon Blade Weapon Skills.
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| - Use Yatousen to inflict massive damage in a short time.
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| - Use Magatsuhi to Bloodbath Kill five or more enemies in a short time.
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| - Use Kage-Hiruko to defeat an enemy launched in the air.
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| - Complete the Mecha Soldier Boss Trial.
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| - Complete twenty Missions.
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| - Reach maximum health with Yakumo and Ryu.
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| - Obtain 100,000 NinjaCoin.
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| - Defeat the Kitsune Courtesan and break the first seal.
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- Priestess of the Dark Dragon
| - Revive the Dark Dragon in exchange for Seori's life.
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- Raven Gear: Dragonfly Glider
| - Use the Dragonfly Glider.
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- Return of the Super Ninja
| - Start Ryu Hayabusa's story.
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- Scornful Mother of the Damned
| - Complete the Seere Boss Trial.
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| - Complete any chapter without dying (excluding Chapters 00 and 14)
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| - Defeat Cetus and break the third seal.
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| - Clear Chapter 10 without hitting any obstacles (Auto Movement must be turned OFF)
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- The Art of the Bloodbath Kill
| - Perform a Bloodbath Kill.
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- The Art of the Bloodbath Slaughter
| - Perform a Bloodbath Slaughter.
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| - Clear Chapter 02 without falling once (Auto Movement must be turned OFF)
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| - Head to the final battle carrying the wishes of Seori (and Kureha)
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| - Defeat the mysterious fiend in Tokyo.
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| - Bring peace to Tokyo once more.
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| - Acquire all achievements.
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| - Defeat three enemies in a row with an Ultimate Technique.
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| - Complete the game on MASTER NINJA difficulty.
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- Way of the New Master Ninja
| - Complete "The Two Masters" on MASTER NINJA difficulty.
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| - Recover the lost Dark Dragon Blade.
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