These are the locations and ways to get the bottles:

Trilby Highlands. Buy it from the Deku in the cave in Trilby Highlands.
Hyrule Town Shrinkand enter the shop from mamas cafe. Grow, take the bottle, and the guy will tell you to feed his dog. Go to lake hylia, and feed the dog in the house.
Your house Fuse kinsyones with master smith. Go to Eastern Hills, and get the bottle in the chest.
Eastern Hills Finish the Goron sidequest.