Boosts
Select the "Other" category in the store. The Experience Crystal Lvl 1 costs only 510 coins and results in 8,800 experience points. You can purchase specific equipment at the store if you have enough Crystals or can take advantage of any Packages you might have active.
Restore energy
After running out of energy, advance the time on your device to restore it. Afterwards, set the time back to its correct value.
Upgrades
Upgrade your Armor first, as it is difficult to replace and is very useful. Then, work on your weapons and ship. After maxing out your weapons and ship, you can Advance them if the required materials are available.